Using Cellprofiler to count viral particles (IV)

Identifying the Particles In the first three episodes of this tutorial, the groundwork has been laid to carry out the real task at hand, namely to identify the spots in this image as viral particles and then to count them. In this post, I’ll describe the process I went through to configure each of the many Read more about Using Cellprofiler to count viral particles (IV)[…]

Using Cellprofiler to count viral particles (III)

DETAILS-ANALYSIS MODULES This is the third post in this series of how to count viral particles with Cellprofiler. With the “ColorToGray” analysis module selected, the options in the image to the left are available for me to use to properly configure this module. I first select “StartingImage” from the popup menu that allows me to Read more about Using Cellprofiler to count viral particles (III)[…]

Using Cellprofiler to count viral particles (II)

DETAILS-INPUT MODULES This is the second post in a series that will eventually describe the entire process of counting viral particles. Before we can start analysing images, we have to get the image data into Cellprofiler. The program uses a series of input modules to do this. After correctly configuring the “Input modules” section of Cellprofiler Read more about Using Cellprofiler to count viral particles (II)[…]

Status update

OMX is fine The Leica SP5 has an issue. It can still be used, but only as a 4 channel machine rather than 5 channel. Repairs scheduled for 29 July. This shouldn’t affect anybody’s ability to use the scope in the meantime. Start the machine with the special “machine-4ch-config” configuration file rather than the normal Read more about Status update[…]

OMX is down

OMX stage is non functional. Repair beginning today 23/06/2014. Estimated to be functional again sometime tomorrow.